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Add pathguide under biology

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Xiaming 2015-09-16 13:43:41 +08:00
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@ -20,14 +20,15 @@ Biology
------- -------
* `1000 Genomes <http://www.1000genomes.org/data>`_ * `1000 Genomes <http://www.1000genomes.org/data>`_
* `American Gut (Microbiome Project) <https://github.com/biocore/American-Gut>`_
* `Collaborative Research in Computational Neuroscience (CRCNS) <http://crcns.org/data-sets>`_ * `Collaborative Research in Computational Neuroscience (CRCNS) <http://crcns.org/data-sets>`_
* `Gene Expression Omnibus (GEO) <http://www.ncbi.nlm.nih.gov/geo/>`_ * `Gene Expression Omnibus (GEO) <http://www.ncbi.nlm.nih.gov/geo/>`_
* `Human Microbiome Project (HMP) <http://www.hmpdacc.org/reference_genomes/reference_genomes.php>`_ * `Human Microbiome Project (HMP) <http://www.hmpdacc.org/reference_genomes/reference_genomes.php>`_
* `American Gut (Microbiome Project) <https://github.com/biocore/American-Gut>`_
* `ICOS PSP Benchmark <http://www.infobiotic.net/PSPbenchmarks/>`_ * `ICOS PSP Benchmark <http://www.infobiotic.net/PSPbenchmarks/>`_
* `MIT Cancer Genomics Data <http://www.broadinstitute.org/cgi-bin/cancer/datasets.cgi>`_ * `MIT Cancer Genomics Data <http://www.broadinstitute.org/cgi-bin/cancer/datasets.cgi>`_
* `NIH Microarray data (FTP) <http://bit.do/VVW6>`_ * `NIH Microarray data (FTP) <http://bit.do/VVW6>`_
* `OpenSNP genotypes data <https://opensnp.org/>`_ * `OpenSNP genotypes data <https://opensnp.org/>`_
* `Pathguid: Protein-Protein Interactions Catalog <http://www.pathguide.org/>`_
* `Protein Data Bank <http://pdb.org/>`_ * `Protein Data Bank <http://pdb.org/>`_
* `PubChem Project <https://pubchem.ncbi.nlm.nih.gov/>`_ * `PubChem Project <https://pubchem.ncbi.nlm.nih.gov/>`_
* `PubGene (now Coremine Medical) <http://www.pubgene.org/>`_ * `PubGene (now Coremine Medical) <http://www.pubgene.org/>`_
@ -61,17 +62,17 @@ Complex Networks
* `DBLP Citation dataset <https://kdl.cs.umass.edu/display/public/DBLP>`_ * `DBLP Citation dataset <https://kdl.cs.umass.edu/display/public/DBLP>`_
* `NBER Patent Citations <http://nber.org/patents/>`_ * `NBER Patent Citations <http://nber.org/patents/>`_
* `NIST complex networks data collection <http://math.nist.gov/~RPozo/complex_datasets.html>`_ * `NIST complex networks data collection <http://math.nist.gov/~RPozo/complex_datasets.html>`_
* `Small Network Data <http://www-personal.umich.edu/~mejn/netdata/>`_
* `UCI Network Data Repository <https://networkdata.ics.uci.edu/resources.php>`_
* `Protein-protein interaction network <http://vlado.fmf.uni-lj.si/pub/networks/data/bio/Yeast/Yeast.htm>`_ * `Protein-protein interaction network <http://vlado.fmf.uni-lj.si/pub/networks/data/bio/Yeast/Yeast.htm>`_
* `PyPI and Maven Dependency Network <http://ogirardot.wordpress.com/2013/01/31/sharing-pypimaven-dependency-data/>`_ * `PyPI and Maven Dependency Network <http://ogirardot.wordpress.com/2013/01/31/sharing-pypimaven-dependency-data/>`_
* `Scopus Citation Database <http://www.elsevier.com/online-tools/scopus>`_ * `Scopus Citation Database <http://www.elsevier.com/online-tools/scopus>`_
* `Small Network Data <http://www-personal.umich.edu/~mejn/netdata/>`_
* `Stanford GraphBase (Steven Skiena) <http://www3.cs.stonybrook.edu/~algorith/implement/graphbase/implement.shtml>`_ * `Stanford GraphBase (Steven Skiena) <http://www3.cs.stonybrook.edu/~algorith/implement/graphbase/implement.shtml>`_
* `Stanford Large Network Dataset Collection <http://snap.stanford.edu/data/>`_ * `Stanford Large Network Dataset Collection <http://snap.stanford.edu/data/>`_
* `The Koblenz Network Collection <http://konect.uni-koblenz.de/>`_ * `The Koblenz Network Collection <http://konect.uni-koblenz.de/>`_
* `The Laboratory for Web Algorithmics (UNIMI) <http://law.di.unimi.it/datasets.php>`_ * `The Laboratory for Web Algorithmics (UNIMI) <http://law.di.unimi.it/datasets.php>`_
* `The Nexus Network Repository <http://nexus.igraph.org/>`_ * `The Nexus Network Repository <http://nexus.igraph.org/>`_
* `UCI Network Data Repository <http://networkdata.ics.uci.edu/resources.php>`_ * `UCI Network Data Repository <http://networkdata.ics.uci.edu/resources.php>`_
* `UCI Network Data Repository <https://networkdata.ics.uci.edu/resources.php>`_
* `UFL sparse matrix collection <http://www.cise.ufl.edu/research/sparse/matrices/>`_ * `UFL sparse matrix collection <http://www.cise.ufl.edu/research/sparse/matrices/>`_
* `WSU Graph Database <http://www.eecs.wsu.edu/mgd/gdb.html>`_ * `WSU Graph Database <http://www.eecs.wsu.edu/mgd/gdb.html>`_